API

Import Paste as:

import paste as pst

Alignment

pairwise_align(sliceA, sliceB[, alpha, ...])	Calculates and returns optimal alignment of two slices.
center_align(A, slices[, lmbda, alpha, ...])	Computes center alignment of slices.

Visualization

stack_slices_pairwise(slices, pis[, ...])	Align spatial coordinates of sequential pairwise slices.
stack_slices_center(center_slice, slices, pis)	Align spatial coordinates of a list of slices to a center_slice.
plot_slice(sliceX, color[, ax, s])	Plots slice spatial coordinates.

Miscellaneous

filter_for_common_genes(slices)	Filters for the intersection of genes between all slices.
match_spots_using_spatial_heuristic(X, Y[, ...])	Calculates and returns a mapping of spots using a spatial heuristic.
apply_trsf(M, translation, points)	Apply a rotation from a 2x2 rotation matrix M together with a translation from a translation vector of length 2 translation to a list of points.